PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801243.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 673aa    MW: 78206.1 Da    PI: 6.6565
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.62e-2362146190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn+Y+ke GF +r+s+s  +++ +e +++++ Cs  g+++++  +     ++r+etrtgC a+l++k+ ++++w++ ++el+HnH+++
  XP_009801243.1  62 DFYNRYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSGAN-----HPRPETRTGCPAMLVIKLADSKRWRIVEVELQHNHPVS 146
                     6*********************999******************9988.....9**********************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-2162147IPR004330FAR1 DNA binding domain
PfamPF105511.7E-23267359IPR018289MULE transposase domain
PROSITE profilePS509669.31553589IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-6564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MFQMEAVCLN SDPVFDDCEE YEDEEDCSVE EHDDGVHEKD SKKESPQPTI GLEFGSFDEA  60
YDFYNRYGKE QGFGIRVSNS WFRSKRKERY RAKLSCSSAG FKKKSGANHP RPETRTGCPA  120
MLVIKLADSK RWRIVEVELQ HNHPVSPEVR RFYKSHKKMI LADKKQQESI PITEVHTIKL  180
YRTSIDAACN GLQKIKDKDS RFPVDTSKHL ELKEGDANAL YNYFCRMKLT NPNFFYLLDL  240
DDQGCLRNVF WADARSRAAF NYFSDAVAID TTSLRNKYVL PLISFVGVNN HGQPVLLGCG  300
FLGHESVEYF IWMFKSWHTS MLGRHPQVIV TDQSKPLQIA VSKVFPQARH CYCLSYIMQR  360
VPEKLGGLDG YESIKMQLYK AVYDSLKITE FESSWGQMIS QHGLKDNKWL QSLYEDREKW  420
VPVYLKDISF MGIIPITENE SLNAYFDGYV HKHTSFKEFV DKYDLAMQRK HMKEAMADME  480
SRSLSFELKT NCNFEVKLSK IFTKEIFKKF QAEVEGIYSC FNTRQVNING PIMTFVVKER  540
VESEGSEVEV KLFEVLYETT QAEIRCICSL FNFKGYLCRH ALNVLNYNGV EEIPSQYILP  600
RWDKDYKRKF PVDSGLCHID VNNPVELYNI LHKHVMQVVE EGVQSEEHYK AVLQEVEALL  660
SRFSLEDNNL VSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801243.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
RefseqXP_016487877.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A061GQL80.0A0A061GQL8_THECC; FAR1-related sequence 6 isoform 1
STRINGPOPTR_0006s27240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6